WLS Wave 1 DNA data (wide form) - person records (one person per record; each SNP is represented by one variable) Notes: (1) Missing in the SNP call includes: ?, Bad and blank (blank sometimes means that the test for that particular SNP was not performed) (2) num_of_missdif = num_of_miss + num_of_diff. Cases with num_of_missdif>=10 are flagged for recollect in the 2010-2012 round (if they're eligible for the 2010-2012 round). ------------------------------------------------------------------------------- idpriv Protected data release ID from version 12.24 on. Limited access. Replaced idswl. ------------------------------------------------------------------------------- type: numeric (long) range: [800004,833954] units: 1 unique values: 5626 missing .: 0/7101 mean: 817175 std. dev: 9833.23 percentiles: 10% 25% 50% 75% 90% 803501 808622 817337 825802 830612 ------------------------------------------------------------------------------- rtype Respondent type: g=graduate, s=sibling ------------------------------------------------------------------------------- type: string (str1) unique values: 2 missing "": 0/7101 tabulation: Freq. Value 4569 "g" 2532 "s" ------------------------------------------------------------------------------- expand_id =1 if duplicate (case) ------------------------------------------------------------------------------- type: numeric (byte) range: [0,1] units: 1 unique values: 2 missing .: 0/7101 tabulation: Freq. Value 7084 0 17 1 ------------------------------------------------------------------------------- kbatch Kbioscience delivery batch: 1=1st, 2=2nd, 3=3rd, 4=4th ------------------------------------------------------------------------------- type: numeric (float) range: [1,4] units: 1 unique values: 4 missing .: 0/7101 tabulation: Freq. Value 1789 1 1720 2 3185 3 407 4 ------------------------------------------------------------------------------- GnRH_novel GnRH_novel call ------------------------------------------------------------------------------- type: string (str3) unique values: 5 missing "": 0/7101 tabulation: Freq. Value 162 "?" 1 "Bad" 890 "C:C" 3242 "T:C" 2806 "T:T" ------------------------------------------------------------------------------- rs1018381 rs1018381 call ------------------------------------------------------------------------------- type: string (str3) unique values: 5 missing "": 0/7101 tabulation: Freq. Value 86 "?" 1 "Bad" 5945 "C:C" 1023 "C:T" 46 "T:T" ------------------------------------------------------------------------------- rs1042838 rs1042838 call ------------------------------------------------------------------------------- type: string (str3) unique values: 5 missing "": 0/7101 tabulation: Freq. Value 126 "?" 174 "A:A" 1 "Bad" 1683 "C:A" 5117 "C:C" ------------------------------------------------------------------------------- rs11178997 rs11178997 call ------------------------------------------------------------------------------- type: string (str3) unique values: 5 missing "": 0/7101 tabulation: Freq. Value 122 "?" 39 "A:A" 1 "Bad" 813 "T:A" 6126 "T:T" ------------------------------------------------------------------------------- rs1137100 rs1137100 call ------------------------------------------------------------------------------- type: string (str3) unique values: 5 missing "": 0/7101 tabulation: Freq. Value 140 "?" 3743 "A:A" 1 "Bad" 2688 "G:A" 529 "G:G" ------------------------------------------------------------------------------- rs11564774 rs11564774 call ------------------------------------------------------------------------------- type: string (str3) unique values: 5 missing "": 6/7101 tabulation: Freq. Value 6 "" 90 "?" 1 "Bad" 350 "C:C" 2499 "G:C" 4155 "G:G" ------------------------------------------------------------------------------- rs11640851 rs11640851 call ------------------------------------------------------------------------------- type: string (str3) unique values: 5 missing "": 1812/7101 tabulation: Freq. Value 1812 "" 170 "?" 2174 "A:A" 1 "Bad" 2322 "C:A" 622 "C:C" ------------------------------------------------------------------------------- rs11902591 rs11902591 call ------------------------------------------------------------------------------- type: string (str3) unique values: 5 missing "": 0/7101 tabulation: Freq. Value 119 "?" 6042 "A:A" 1 "Bad" 907 "G:A" 32 "G:G" ------------------------------------------------------------------------------- rs12152850 rs12152850 call ------------------------------------------------------------------------------- type: string (str3) unique values: 5 missing "": 0/7101 tabulation: Freq. Value 140 "?" 1 "Bad" 4769 "C:C" 2001 "T:C" 190 "T:T" ------------------------------------------------------------------------------- rs12313279 rs12313279 call ------------------------------------------------------------------------------- type: string (str3) unique values: 5 missing "": 0/7101 tabulation: Freq. Value 180 "?" 586 "A:A" 2 "Bad" 2913 "G:A" 3420 "G:G" ------------------------------------------------------------------------------- rs12602084 rs12602084 call ------------------------------------------------------------------------------- type: string (str3) unique values: 5 missing "": 2/7101 tabulation: Freq. Value 2 "" 157 "?" 1 "Bad" 3132 "C:C" 2779 "T:C" 1030 "T:T" ------------------------------------------------------------------------------- rs12664989 rs12664989 call ------------------------------------------------------------------------------- type: string (str3) unique values: 5 missing "": 0/7101 tabulation: Freq. Value 100 "?" 1 "Bad" 1 "C:C" 30 "G:C" 6969 "G:G" ------------------------------------------------------------------------------- rs12913832 rs12913832 call ------------------------------------------------------------------------------- type: string (str3) unique values: 5 missing "": 19/7101 tabulation: Freq. Value 19 "" 122 "?" 299 "A:A" 1 "Bad" 2253 "G:A" 4407 "G:G" ------------------------------------------------------------------------------- rs1421085 rs1421085 call ------------------------------------------------------------------------------- type: string (str3) unique values: 5 missing "": 13/7101 tabulation: Freq. Value 13 "" 253 "?" 2 "Bad" 1128 "C:C" 3312 "T:C" 2393 "T:T" ------------------------------------------------------------------------------- rs1424954 rs1424954 call ------------------------------------------------------------------------------- type: string (str3) unique values: 5 missing "": 0/7101 tabulation: Freq. Value 140 "?" 679 "A:A" 1 "Bad" 2943 "G:A" 3338 "G:G" ------------------------------------------------------------------------------- rs1435252 rs1435252 call ------------------------------------------------------------------------------- type: string (str3) unique values: 5 missing "": 64/7101 tabulation: Freq. Value 64 "" 94 "?" 1 "Bad" 3534 "C:C" 2809 "T:C" 599 "T:T" ------------------------------------------------------------------------------- rs144848 rs144848 call ------------------------------------------------------------------------------- type: string (str3) unique values: 5 missing "": 3/7101 tabulation: Freq. Value 3 "" 117 "?" 1 "Bad" 561 "G:G" 2758 "G:T" 3661 "T:T" ------------------------------------------------------------------------------- rs1501299 rs1501299 call ------------------------------------------------------------------------------- type: string (str3) unique values: 5 missing "": 19/7101 tabulation: Freq. Value 19 "" 142 "?" 510 "A:A" 1 "Bad" 2766 "C:A" 3663 "C:C" ------------------------------------------------------------------------------- rs1535_chr11 rs1535_chr11 call ------------------------------------------------------------------------------- type: string (str3) unique values: 5 missing "": 19/7101 tabulation: Freq. Value 19 "" 123 "?" 3199 "A:A" 1 "Bad" 2991 "G:A" 768 "G:G" ------------------------------------------------------------------------------- rs17070145 rs17070145 call ------------------------------------------------------------------------------- type: string (str3) unique values: 5 missing "": 19/7101 tabulation: Freq. Value 19 "" 109 "?" 1 "Bad" 3198 "C:C" 3073 "C:T" 701 "T:T" ------------------------------------------------------------------------------- rs174575 rs174575 call ------------------------------------------------------------------------------- type: string (str3) unique values: 5 missing "": 5/7101 tabulation: Freq. Value 5 "" 95 "?" 1 "Bad" 4055 "C:C" 2531 "C:G" 414 "G:G" ------------------------------------------------------------------------------- rs17529477 rs17529477 call ------------------------------------------------------------------------------- type: string (str3) unique values: 5 missing "": 8/7101 tabulation: Freq. Value 8 "" 153 "?" 725 "A:A" 1 "Bad" 2944 "G:A" 3270 "G:G" ------------------------------------------------------------------------------- rs17561 rs17561 call ------------------------------------------------------------------------------- type: string (str3) unique values: 5 missing "": 23/7101 tabulation: Freq. Value 23 "" 124 "?" 1 "Bad" 3466 "G:G" 2869 "T:G" 618 "T:T" ------------------------------------------------------------------------------- rs17571 rs17571 call ------------------------------------------------------------------------------- type: string (str3) unique values: 5 missing "": 5/7101 tabulation: Freq. Value 5 "" 149 "?" 45 "A:A" 1 "Bad" 998 "G:A" 5903 "G:G" ------------------------------------------------------------------------------- rs17635850 rs17635850 call ------------------------------------------------------------------------------- type: string (str3) unique values: 4 missing "": 5281/7101 tabulation: Freq. Value 5281 "" 52 "?" 642 "A:A" 846 "G:A" 280 "G:G" ------------------------------------------------------------------------------- rs1799913 rs1799913 call ------------------------------------------------------------------------------- type: string (str3) unique values: 5 missing "": 6/7101 tabulation: Freq. Value 6 "" 148 "?" 1009 "A:A" 1 "Bad" 3347 "C:A" 2590 "C:C" ------------------------------------------------------------------------------- rs1799945 rs1799945 call ------------------------------------------------------------------------------- type: string (str3) unique values: 5 missing "": 6/7101 tabulation: Freq. Value 6 "" 118 "?" 1 "Bad" 5085 "C:C" 1770 "G:C" 121 "G:G" ------------------------------------------------------------------------------- rs1799966 rs1799966 call ------------------------------------------------------------------------------- type: string (str3) unique values: 5 missing "": 19/7101 tabulation: Freq. Value 19 "" 95 "?" 3183 "A:A" 1 "Bad" 3040 "G:A" 763 "G:G" ------------------------------------------------------------------------------- rs1799998 rs1799998 call ------------------------------------------------------------------------------- type: string (str3) unique values: 5 missing "": 13/7101 tabulation: Freq. Value 13 "" 254 "?" 2128 "A:A" 3313 "A:G" 1 "Bad" 1392 "G:G" ------------------------------------------------------------------------------- rs1800046 rs1800046 call ------------------------------------------------------------------------------- type: string (str3) unique values: 5 missing "": 0/7101 tabulation: Freq. Value 93 "?" 1 "Bad" 7002 "C:C" 1 "G:C" 4 "G:G" ------------------------------------------------------------------------------- rs1800497 rs1800497 call ------------------------------------------------------------------------------- type: string (str3) unique values: 5 missing "": 0/7101 tabulation: Freq. Value 133 "?" 1 "Bad" 4551 "C:C" 2160 "C:T" 256 "T:T" ------------------------------------------------------------------------------- rs1800795 rs1800795 call ------------------------------------------------------------------------------- type: string (str3) unique values: 5 missing "": 55/7101 tabulation: Freq. Value 55 "" 87 "?" 1 "Bad" 1329 "C:C" 3390 "C:G" 2239 "G:G" ------------------------------------------------------------------------------- rs1800955 rs1800955 call ------------------------------------------------------------------------------- type: string (str3) unique values: 5 missing "": 19/7101 tabulation: Freq. Value 19 "" 110 "?" 1 "Bad" 1358 "C:C" 3463 "C:T" 2150 "T:T" ------------------------------------------------------------------------------- rs1805192 rs1805192 call ------------------------------------------------------------------------------- type: string (str3) unique values: 5 missing "": 0/7101 tabulation: Freq. Value 130 "?" 1 "Bad" 6965 "C:C" 1 "G:C" 4 "G:G" ------------------------------------------------------------------------------- rs1805420 rs1805420 call ------------------------------------------------------------------------------- type: string (str3) unique values: 5 missing "": 6/7101 tabulation: Freq. Value 6 "" 71 "?" 1 "Bad" 6637 "C:C" 262 "G:C" 124 "G:G" ------------------------------------------------------------------------------- rs1937_chr10 rs1937_chr10 call ------------------------------------------------------------------------------- type: string (str3) unique values: 5 missing "": 19/7101 tabulation: Freq. Value 19 "" 122 "?" 3 "Bad" 74 "C:C" 1291 "G:C" 5592 "G:G" ------------------------------------------------------------------------------- rs2059693 rs2059693 call ------------------------------------------------------------------------------- type: string (str3) unique values: 5 missing "": 0/7101 tabulation: Freq. Value 174 "?" 1 "Bad" 3569 "C:C" 2777 "T:C" 580 "T:T" ------------------------------------------------------------------------------- rs2061174 rs2061174 call ------------------------------------------------------------------------------- type: string (str3) unique values: 5 missing "": 33/7101 tabulation: Freq. Value 33 "" 195 "?" 3098 "A:A" 1 "Bad" 3066 "G:A" 708 "G:G" ------------------------------------------------------------------------------- rs2071219 rs2071219 call ------------------------------------------------------------------------------- type: string (str3) unique values: 5 missing "": 6/7101 tabulation: Freq. Value 6 "" 152 "?" 2104 "A:A" 1 "Bad" 3343 "G:A" 1495 "G:G" ------------------------------------------------------------------------------- rs2227845 rs2227845 call ------------------------------------------------------------------------------- type: string (str3) unique values: 4 missing "": 0/7101 tabulation: Freq. Value 84 "?" 1 "Bad" 4 "G:G" 7012 "T:T" ------------------------------------------------------------------------------- rs2237436 rs2237436 call ------------------------------------------------------------------------------- type: string (str3) unique values: 5 missing "": 0/7101 tabulation: Freq. Value 93 "?" 1 "Bad" 2951 "C:C" 3196 "G:C" 860 "G:G" ------------------------------------------------------------------------------- rs2241766 rs2241766 call ------------------------------------------------------------------------------- type: string (str3) unique values: 5 missing "": 19/7101 tabulation: Freq. Value 19 "" 94 "?" 1 "Bad" 84 "G:G" 1309 "T:G" 5594 "T:T" ------------------------------------------------------------------------------- rs2242592 rs2242592 call ------------------------------------------------------------------------------- type: string (str3) unique values: 5 missing "": 6/7101 tabulation: Freq. Value 6 "" 129 "?" 1 "Bad" 646 "C:C" 2899 "T:C" 3420 "T:T" ------------------------------------------------------------------------------- rs2254298 rs2254298 call ------------------------------------------------------------------------------- type: string (str3) unique values: 5 missing "": 19/7101 tabulation: Freq. Value 19 "" 114 "?" 84 "A:A" 1 "Bad" 1306 "G:A" 5577 "G:G" ------------------------------------------------------------------------------- rs2267539 rs2267539 call ------------------------------------------------------------------------------- type: string (str3) unique values: 5 missing "": 1781/7101 tabulation: Freq. Value 1781 "" 124 "?" 189 "A:A" 1 "Bad" 1477 "G:A" 3529 "G:G" ------------------------------------------------------------------------------- rs2306604 rs2306604 call ------------------------------------------------------------------------------- type: string (str3) unique values: 5 missing "": 5/7101 tabulation: Freq. Value 5 "" 120 "?" 2299 "A:A" 1 "Bad" 3367 "G:A" 1309 "G:G" ------------------------------------------------------------------------------- rs25533 rs25533 call ------------------------------------------------------------------------------- type: string (str3) unique values: 5 missing "": 19/7101 tabulation: Freq. Value 19 "" 105 "?" 1 "Bad" 22 "C:C" 911 "T:C" 6043 "T:T" ------------------------------------------------------------------------------- rs2760118 rs2760118 call ------------------------------------------------------------------------------- type: string (str3) unique values: 5 missing "": 7/7101 tabulation: Freq. Value 7 "" 135 "?" 763 "A:A" 1 "Bad" 3203 "G:A" 2992 "G:G" ------------------------------------------------------------------------------- rs2779562 rs2779562 call ------------------------------------------------------------------------------- type: string (str3) unique values: 5 missing "": 0/7101 tabulation: Freq. Value 167 "?" 1 "Bad" 1625 "C:C" 3556 "T:C" 1752 "T:T" ------------------------------------------------------------------------------- rs2963238 rs2963238 call ------------------------------------------------------------------------------- type: string (str3) unique values: 5 missing "": 0/7101 tabulation: Freq. Value 129 "?" 1111 "A:A" 1 "Bad" 3430 "C:A" 2430 "C:C" ------------------------------------------------------------------------------- rs35118453 rs35118453 call ------------------------------------------------------------------------------- type: string (str3) unique values: 5 missing "": 1/7101 tabulation: Freq. Value 1 "" 108 "?" 1 "Bad" 4394 "C:C" 2314 "T:C" 283 "T:T" ------------------------------------------------------------------------------- rs363050 rs363050 call ------------------------------------------------------------------------------- type: string (str3) unique values: 5 missing "": 0/7101 tabulation: Freq. Value 146 "?" 2293 "A:A" 1 "Bad" 3386 "G:A" 1275 "G:G" ------------------------------------------------------------------------------- rs3749386 rs3749386 call ------------------------------------------------------------------------------- type: string (str3) unique values: 5 missing "": 19/7101 tabulation: Freq. Value 19 "" 123 "?" 2 "Bad" 1497 "C:C" 3408 "T:C" 2052 "T:T" ------------------------------------------------------------------------------- rs3761793 rs3761793 call ------------------------------------------------------------------------------- type: string (str3) unique values: 5 missing "": 1799/7101 tabulation: Freq. Value 1799 "" 105 "?" 81 "A:A" 1 "Bad" 1003 "G:A" 4112 "G:G" ------------------------------------------------------------------------------- rs3788862 rs3788862 call ------------------------------------------------------------------------------- type: string (str3) unique values: 5 missing "": 11/7101 tabulation: Freq. Value 11 "" 125 "?" 1246 "A:A" 1 "Bad" 1469 "G:A" 4249 "G:G" ------------------------------------------------------------------------------- rs3797297 rs3797297 call ------------------------------------------------------------------------------- type: string (str3) unique values: 5 missing "": 6/7101 tabulation: Freq. Value 6 "" 138 "?" 1 "Bad" 4613 "G:G" 2107 "T:G" 236 "T:T" ------------------------------------------------------------------------------- rs3802657 rs3802657 call ------------------------------------------------------------------------------- type: string (str3) unique values: 5 missing "": 369/7101 tabulation: Freq. Value 369 "" 255 "?" 1 "Bad" 5033 "G:G" 1326 "T:G" 117 "T:T" ------------------------------------------------------------------------------- rs3853248 rs3853248 call ------------------------------------------------------------------------------- type: string (str3) unique values: 5 missing "": 6/7101 tabulation: Freq. Value 6 "" 159 "?" 1 "Bad" 109 "C:C" 1506 "T:C" 5320 "T:T" ------------------------------------------------------------------------------- rs3990403 rs3990403 call ------------------------------------------------------------------------------- type: string (str3) unique values: 5 missing "": 19/7101 tabulation: Freq. Value 19 "" 192 "?" 2 "Bad" 4847 "C:C" 1859 "T:C" 182 "T:T" ------------------------------------------------------------------------------- rs4073366 rs4073366 call ------------------------------------------------------------------------------- type: string (str3) unique values: 5 missing "": 0/7101 tabulation: Freq. Value 147 "?" 1 "Bad" 4837 "C:C" 1911 "G:C" 205 "G:G" ------------------------------------------------------------------------------- rs4245147 rs4245147 call ------------------------------------------------------------------------------- type: string (str3) unique values: 5 missing "": 0/7101 tabulation: Freq. Value 146 "?" 1 "Bad" 1534 "C:C" 3456 "T:C" 1964 "T:T" ------------------------------------------------------------------------------- rs429358 rs429358 call ------------------------------------------------------------------------------- type: string (str3) unique values: 5 missing "": 19/7101 tabulation: Freq. Value 19 "" 132 "?" 1 "Bad" 152 "C:C" 1728 "C:T" 5069 "T:T" ------------------------------------------------------------------------------- rs4502885 rs4502885 call ------------------------------------------------------------------------------- type: string (str3) unique values: 5 missing "": 0/7101 tabulation: Freq. Value 284 "?" 4696 "A:A" 1 "Bad" 1929 "G:A" 191 "G:G" ------------------------------------------------------------------------------- rs45537037 rs45537037 call ------------------------------------------------------------------------------- type: string (str3) unique values: 5 missing "": 8/7101 tabulation: Freq. Value 8 "" 97 "?" 1 "Bad" 1047 "C:C" 3246 "T:C" 2702 "T:T" ------------------------------------------------------------------------------- rs4680 rs4680 call ------------------------------------------------------------------------------- type: string (str3) unique values: 5 missing "": 0/7101 tabulation: Freq. Value 200 "?" 1914 "A:A" 3 "Bad" 3438 "G:A" 1546 "G:G" ------------------------------------------------------------------------------- rs4986852 rs4986852 call ------------------------------------------------------------------------------- type: string (str3) unique values: 4 missing "": 6/7101 tabulation: Freq. Value 6 "" 100 "?" 3 "Bad" 259 "G:A" 6733 "G:G" ------------------------------------------------------------------------------- rs5031016 rs5031016 call ------------------------------------------------------------------------------- type: string (str3) unique values: 5 missing "": 0/7101 tabulation: Freq. Value 144 "?" 1 "Bad" 3 "C:C" 3 "C:T" 6950 "T:T" ------------------------------------------------------------------------------- rs592389 rs592389 call ------------------------------------------------------------------------------- type: string (str3) unique values: 5 missing "": 20/7101 tabulation: Freq. Value 20 "" 107 "?" 1 "Bad" 2099 "G:G" 3499 "T:G" 1375 "T:T" ------------------------------------------------------------------------------- rs6152_chrX rs6152_chrX call ------------------------------------------------------------------------------- type: string (str3) unique values: 5 missing "": 0/7101 tabulation: Freq. Value 170 "?" 647 "A:A" 2 "Bad" 906 "G:A" 5376 "G:G" ------------------------------------------------------------------------------- rs6166 rs6166 call ------------------------------------------------------------------------------- type: string (str3) unique values: 5 missing "": 0/7101 tabulation: Freq. Value 137 "?" 1 "Bad" 1416 "C:C" 3408 "T:C" 2139 "T:T" ------------------------------------------------------------------------------- rs6169 rs6169 call ------------------------------------------------------------------------------- type: string (str3) unique values: 5 missing "": 2/7101 tabulation: Freq. Value 2 "" 194 "?" 1 "Bad" 2185 "C:C" 3405 "T:C" 1314 "T:T" ------------------------------------------------------------------------------- rs6265 rs6265 call ------------------------------------------------------------------------------- type: string (str3) unique values: 5 missing "": 19/7101 tabulation: Freq. Value 19 "" 93 "?" 284 "A:A" 1 "Bad" 2103 "G:A" 4601 "G:G" ------------------------------------------------------------------------------- rs6277 rs6277 call ------------------------------------------------------------------------------- type: string (str3) unique values: 5 missing "": 0/7101 tabulation: Freq. Value 146 "?" 1 "Bad" 1499 "C:C" 3422 "C:T" 2033 "T:T" ------------------------------------------------------------------------------- rs6312 rs6312 call ------------------------------------------------------------------------------- type: string (str3) unique values: 5 missing "": 7/7101 tabulation: Freq. Value 7 "" 125 "?" 6200 "A:A" 2 "Bad" 753 "G:A" 14 "G:G" ------------------------------------------------------------------------------- rs6314 rs6314 call ------------------------------------------------------------------------------- type: string (str3) unique values: 5 missing "": 0/7101 tabulation: Freq. Value 154 "?" 1 "Bad" 5846 "C:C" 1055 "C:T" 45 "T:T" ------------------------------------------------------------------------------- rs6318 rs6318 call ------------------------------------------------------------------------------- type: string (str3) unique values: 5 missing "": 0/7101 tabulation: Freq. Value 134 "?" 2 "Bad" 608 "C:C" 1010 "C:G" 5347 "G:G" ------------------------------------------------------------------------------- rs6521 rs6521 call ------------------------------------------------------------------------------- type: string (str3) unique values: 5 missing "": 1799/7101 tabulation: Freq. Value 1799 "" 192 "?" 1 "Bad" 832 "C:C" 2473 "G:C" 1804 "G:G" ------------------------------------------------------------------------------- rs669 rs669 call ------------------------------------------------------------------------------- type: string (str3) unique values: 5 missing "": 0/7101 tabulation: Freq. Value 114 "?" 2868 "A:A" 1 "Bad" 3216 "G:A" 902 "G:G" ------------------------------------------------------------------------------- rs707555 rs707555 call ------------------------------------------------------------------------------- type: string (str3) unique values: 5 missing "": 6/7101 tabulation: Freq. Value 6 "" 106 "?" 1 "Bad" 142 "C:C" 1578 "G:C" 5268 "G:G" ------------------------------------------------------------------------------- rs7412 rs7412 call ------------------------------------------------------------------------------- type: string (str3) unique values: 5 missing "": 0/7101 tabulation: Freq. Value 118 "?" 1 "Bad" 5938 "C:C" 1014 "C:T" 30 "T:T" ------------------------------------------------------------------------------- rs760761 rs760761 call ------------------------------------------------------------------------------- type: string (str3) unique values: 5 missing "": 0/7101 tabulation: Freq. Value 174 "?" 1 "Bad" 4379 "C:C" 2246 "C:T" 301 "T:T" ------------------------------------------------------------------------------- rs7761133 rs7761133 call ------------------------------------------------------------------------------- type: string (str3) unique values: 5 missing "": 19/7101 tabulation: Freq. Value 19 "" 127 "?" 1 "Bad" 178 "C:C" 1800 "T:C" 4976 "T:T" ------------------------------------------------------------------------------- rs7997012 rs7997012 call ------------------------------------------------------------------------------- type: string (str3) unique values: 5 missing "": 2/7101 tabulation: Freq. Value 2 "" 181 "?" 1288 "A:A" 1 "Bad" 3433 "G:A" 2196 "G:G" ------------------------------------------------------------------------------- rs8039957 rs8039957 call ------------------------------------------------------------------------------- type: string (str3) unique values: 5 missing "": 0/7101 tabulation: Freq. Value 120 "?" 145 "A:A" 1 "Bad" 1700 "G:A" 5135 "G:G" ------------------------------------------------------------------------------- rs807517 rs807517 call ------------------------------------------------------------------------------- type: string (str3) unique values: 5 missing "": 1801/7101 tabulation: Freq. Value 1801 "" 94 "?" 1 "Bad" 2858 "C:C" 2000 "T:C" 347 "T:T" ------------------------------------------------------------------------------- rs8076005 rs8076005 call ------------------------------------------------------------------------------- type: string (str3) unique values: 5 missing "": 0/7101 tabulation: Freq. Value 124 "?" 4766 "A:A" 1 "Bad" 2002 "G:A" 208 "G:G" ------------------------------------------------------------------------------- rs8191992 rs8191992 call ------------------------------------------------------------------------------- type: string (str3) unique values: 5 missing "": 5/7101 tabulation: Freq. Value 5 "" 115 "?" 1946 "A:A" 1 "Bad" 3467 "T:A" 1567 "T:T" ------------------------------------------------------------------------------- rs821616 rs821616 call ------------------------------------------------------------------------------- type: string (str3) unique values: 5 missing "": 19/7101 tabulation: Freq. Value 19 "" 112 "?" 545 "A:A" 2 "Bad" 2849 "T:A" 3574 "T:T" ------------------------------------------------------------------------------- rs878567 rs878567 call ------------------------------------------------------------------------------- type: string (str3) unique values: 5 missing "": 6/7101 tabulation: Freq. Value 6 "" 114 "?" 1 "Bad" 1679 "C:C" 3523 "T:C" 1778 "T:T" ------------------------------------------------------------------------------- rs908867 rs908867 call ------------------------------------------------------------------------------- type: string (str3) unique values: 5 missing "": 19/7101 tabulation: Freq. Value 19 "" 157 "?" 58 "A:A" 1 "Bad" 1138 "G:A" 5728 "G:G" ------------------------------------------------------------------------------- num_of_missdif Number of missing + different calls ------------------------------------------------------------------------------- type: numeric (float) range: [0,90] units: 1 unique values: 67 missing .: 0/7101 mean: 3.97719 std. dev: 6.51093 percentiles: 10% 25% 50% 75% 90% 1 2 3 5 6 ------------------------------------------------------------------------------- num_of_miss Number of missing, including blank, Bad, and ? calls ------------------------------------------------------------------------------- type: numeric (float) range: [0,90] units: 1 unique values: 64 missing .: 0/7101 mean: 3.8834 std. dev: 6.42317 percentiles: 10% 25% 50% 75% 90% 1 2 3 5 6 ------------------------------------------------------------------------------- num_of_diff Number of SNPs with different calls if genotyped more than once ------------------------------------------------------------------------------- type: numeric (float) range: [0,38] units: 1 unique values: 19 missing .: 0/7101 mean: .09379 std. dev: .884255 percentiles: 10% 25% 50% 75% 90% 0 0 0 0 0 ------------------------------------------------------------------------------- num_of_qb Number of Bad and ? calls ------------------------------------------------------------------------------- type: numeric (float) range: [0,89] units: 1 unique values: 60 missing .: 0/7101 mean: 1.72553 std. dev: 5.27297 percentiles: 10% 25% 50% 75% 90% 0 0 1 2 3 ------------------------------------------------------------------------------- num_of_ques Number of ? calls ------------------------------------------------------------------------------- type: numeric (float) range: [0,89] units: 1 unique values: 60 missing .: 0/7101 mean: 1.71103 std. dev: 5.1685 percentiles: 10% 25% 50% 75% 90% 0 0 1 2 3 ------------------------------------------------------------------------------- num_of_bad Number of Bad calls ------------------------------------------------------------------------------- type: numeric (float) range: [0,89] units: 1 unique values: 3 missing .: 0/7101 tabulation: Freq. Value 7086 0 14 1 1 89 ------------------------------------------------------------------------------- num_of_blank Number of blank (not analyzed) ------------------------------------------------------------------------------- type: numeric (float) range: [0,41] units: 1 unique values: 12 missing .: 0/7101 mean: 2.15787 std. dev: 2.42696 percentiles: 10% 25% 50% 75% 90% 1 1 1 5 5 . . exit end of do-file